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A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
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Posts
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Blog Post number 4
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Blog Post number 1
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publications
Investigating the function of a small secreted protein family in Physcomitrella patens
Published in MOSS Conference, University of Leeds, 2016
Recommended citation: Sherrard, G., Woolard, G., & Wheeler, M. (2016). "Investigating the Function of a Small Secreted Protein Family in Physcomitrella Patens ." MOSS 2016 Conference, 2nd - 5th September 2016, University of Leeds. 1(3). http://Glfrey.github.io/files/moss.pdf
RNA Transcript Assembly Using Inexact Flows
Published in IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2019
Recommended citation: Williams, L., Reynolds, G. and Mumey, B. (2019). "RNA Transcript Assembly Using Inexact Flows." 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) . (pp. 1907-1914). http://Glfrey.github.io/files/rnatrans.pdf
Structure of SPH (self-incompatibility protein homologue) proteins: a widespread family of small, highly stable, secreted proteins
Published in Biochemical Journal, 2019
Recommended citation: Rajasekar, K.V., Ji, S., Coulthard, R.J., Ride, J.P., Reynolds, G.L., Winn, P.J., Wheeler, M.J., Hyde, E.I. and Smith, L.J. (2019). "Structure of SPH (self-incompatibility protein homologue) proteins: a widespread family of small, highly stable, secreted proteins ." Biochemical Journal. 476(5), pp.809-826. http://Glfrey.github.io/files/sph.pdf
Metamorphic Testing for Quality Assurance of Protein Function Prediction Tools
Published in IEEE, 2019
Recommended citation: Shahri, M.P., Srinivasan, M., Reynolds, G., Bimczok, D., Kahanda, I. and Kanewala, U. 2019. "Metamorphic Testing for Quality Assurance of Protein Function Prediction Tools." 2019 IEEE International Conference On Artificial Intelligence Testing (AITest). http://Glfrey.github.io/files/mettest.pdf
PPPred: Classifying Protein-phenotype Co-mentions Extracted from Biomedical Literature
Published in Proceedings of the 10th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, 2019
Recommended citation: Pourreza Shahri, M., Reynolds, G., Roe, M.M. and Kahanda, I. (2019). "PPPred: Classifying protein-phenotype co-mentions extracted from biomedical literature ." Proceedings of the 10th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics . (pp. 414-422). http://Glfrey.github.io/files/pppred.pdf
Computational methods for the ab initio identification of novel microRNA in plants: a systematic review
Published in PeerJ Computer Science, 2019
Recommended citation: Manuweera, B., Reynolds, G. and Kahanda, I. (2019). "Computational methods for the ab initio identification of novel microRNA in plants: a systematic review." PeerJ Computer Science. 5, p.e233.. http://Glfrey.github.io/files/peerj-cs-233.pdf
Identifying features for subgenomic sequence identification in a De Bruijn Graph (DBG)
Published in Tech talks at the CRA-WP Grad Cohort Workshop for Women Conference 2021, 2021
Recommended citation: Reynolds,G., Lachowiec,J., Strnadova-Neeley,V (2021). "Identifying features for subgenomic sequence identification in a De Bruijn Graph (DBG)." Tech talks at the CRA-WP Grad Cohort Workshop for Women Conference 2021 . http://Glfrey.github.io/files/techtalk2021.pdf
MinHash k-mer sketching highlights allopolyploid subgenome sequence differentiation.
Published in ISCB-Africa ASBCB, 2021
Recommended citation: Reynolds,G., Strnadova-Neeley,V., Lachowiec,J. MinHash k-mer sketching highlights allopolyploid subgenomesequence differentiation. ISCB-Africa ASBCB 2021 http://Glfrey.github.io/files/Gillian_Reynolds_ISCB2020.pdf
Transcriptional responses to 2,4-D herbicide treatment of a Eurasian (Myriophyllum spicatum) and a hybrid (M. spicatum × M. sibiricum) genotype of watermilfoil that differ in their sensitivity to 2,4-D
Published in Aquatic Botany, 2023
Recommended citation: Chorak, G.M., Correr, F.H., Lachowiec, J., Reynolds, G. and Thum, R.A., 2023. Transcriptional responses to 2, 4-D herbicide treatment of a Eurasian (Myriophyllum spicatum) and a hybrid (M. spicatum× M. sibiricum) genotype of watermilfoil that differ in their sensitivity to 2, 4-D. Aquatic Botany, 186, p.103631. http://Glfrey.github.io/files/TranscriptionalResponses.pdf
Design, execution, and interpretation of plant RNA-seq analyses
Published in Frontiers In Plant Science, 2023
Recommended citation: Upton, R.N., Correr, F.H., Lile, J., Reynolds, G.L., Falaschi, K., Cook, J.P. and Lachowiec, J., 2023. Design, execution, and interpretation of plant RNA-seq analyses. Frontiers in Plant Science, 14, p.1135455. http://Glfrey.github.io/files/PlantRNASeq.pdf
teaching
Guest Lecturer in Genomics and Bioinformatics
Undergraduate course, The University Worcester, School of Science and the Environment, 2014
A recurring guest lecturer position from 2014-2016 in the third year undergraduate module “Genomics and Bioinformatics” at the University of Worcester where I wrote and delivered lectures and practical workshops on phylogenetics.
Guest lecturer in Introduction to Biological Chemistry
Undergraduate course, The University Worcester, School of Science and the Environment, 2014
Guest Lecturer in the first year undergraduate module “Introduction to Biological Chemistry” at the University of Worcester where I wrote and delivered a lecture and practical workshop on the application of basic protein phylogenetics.
Module Leader in Human Genetics
Undergraduate course, The University Worcester, School of Science and the Environment, 2017
For spring 2017 I served as the module leader for the second year human genetics course at the University of Worcester. In this module, I covered topics such as the human genome project and its updates, the health-related impacts of various large and small-scale genomic mutations, the medical interpretation of pedigrees,the ethics of genomic testing, genomic ancestry and genetic epideniology.
Co-module Leader in Bioinformatics and Genomics
Undergraduate course, The University Worcester, School of Science and the Environment, 2017
For the Autumn 2017 semester, Dr. Mike Wheeler and I redesigned the content of the final year undergraduate module “Genomics and Bioinformatics” to feature updated lectures and practical workshops. Through these sessions we were able to provide students both a sound theoretical background and real hands-on experience on the application of bioinformatics in a wide variety of biological feilds. Specific areas I was responsible for included lectures and workshops on phylogenetics, next generation sequence, genome assembly and annotation and transcriptomics.
Guest Lecturer in Cell Biology
Undergraduate course, The University Worcester, School of Science and the Environment, 2020
Guest Lecturer in the first year undergraduate module “Cell Biology” at the University of Worcester where the subject was “An introduction to bioinformatics” which featured both a lecture and a practical workshop.